FastQCFastQC Report
mar. 12 nov. 2019
sampleA_R1_fastq_1_fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenamesampleA_R1_fastq_1_fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90126
Sequences flagged as poor quality0
Sequence length251
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2270.2518696047755365No Hit
TGTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2170.2407740274726494No Hit
GGTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2100.23300712336062845No Hit
GGGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2090.23189756563033975No Hit
TGTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2090.23189756563033975No Hit
GTTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2070.22967845016976232No Hit
TTTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2030.2252402192486075No Hit
GGTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC2000.22191154605774138No Hit
GTTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1950.21636375740629785No Hit
GTGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1910.21192552648514304No Hit
TGGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1830.2030490646428334No Hit
GCTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1810.20082994918225594No Hit
GTGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1800.19972039145196727No Hit
TGCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1800.19972039145196727No Hit
TTGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1800.19972039145196727No Hit
TTGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1800.19972039145196727No Hit
GTATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1770.19639171826110113No Hit
TGCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1760.1952821605308124No Hit
TCTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1720.1908439296096576No Hit
TTTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1710.18973437187936887No Hit
GGGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1690.18751525641879146No Hit
CTTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1680.18640569868850276No Hit
GGCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1670.18529614095821406No Hit
GCGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1650.18307702549763663No Hit
CGTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1630.18085791003705923No Hit
CTGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1630.18085791003705923No Hit
TGAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1570.174200563655327No Hit
GCTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1570.174200563655327No Hit
GATGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1560.1730910059250383No Hit
TGGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1560.1730910059250383No Hit
TATTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1550.17198144819474956No Hit
TGTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1550.17198144819474956No Hit
TGTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1530.16976233273417216No Hit
TTATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1510.16754321727359475No Hit
GGTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1510.16754321727359475No Hit
TTTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1490.16532410181301732No Hit
GGCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1480.16421454408272862No Hit
GTTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1470.16310498635243992No Hit
CTGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1470.16310498635243992No Hit
CGTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1470.16310498635243992No Hit
TTCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1450.16088587089186251No Hit
GTAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1430.1586667554312851No Hit
TTAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1430.1586667554312851No Hit
TAGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1430.1586667554312851No Hit
TATGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1420.15755719770099638No Hit
ATTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1420.15755719770099638No Hit
CGGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1420.15755719770099638No Hit
AGGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1400.15533808224041898No Hit
TTGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1400.15533808224041898No Hit
TCTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1400.15533808224041898No Hit
GTGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1400.15533808224041898No Hit
ATGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1390.15422852451013025No Hit
CTTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1380.15311896677984155No Hit
GTCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1380.15311896677984155No Hit
GGGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1360.15089985131926414No Hit
TCGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1360.15089985131926414No Hit
GCGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1360.15089985131926414No Hit
AGTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1310.1453520626678206No Hit
ATTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1310.1453520626678206No Hit
GCAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1300.1442425049375319No Hit
TGGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1290.1431329472072432No Hit
CGCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1290.1431329472072432No Hit
CCTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1290.1431329472072432No Hit
TTCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1290.1431329472072432No Hit
CAGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1280.14202338947695448No Hit
GATTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1280.14202338947695448No Hit
TGCACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1270.14091383174666577No Hit
AGGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1260.13980427401637707No Hit
TCGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1260.13980427401637707No Hit
ACTGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1260.13980427401637707No Hit
GCGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1250.13869471628608834No Hit
AGTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1250.13869471628608834No Hit
TTCACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1250.13869471628608834No Hit
GTTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1240.13758515855579967No Hit
CGGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1240.13758515855579967No Hit
TCTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1240.13758515855579967No Hit
CATGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1230.13647560082551094No Hit
TAGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1230.13647560082551094No Hit
CTATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1210.13425648536493354No Hit
TGGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1200.13314692763464483No Hit
GGTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1200.13314692763464483No Hit
AGCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1200.13314692763464483No Hit
GTCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1200.13314692763464483No Hit
GTGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1190.13203736990435613No Hit
GGAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1190.13203736990435613No Hit
ATTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1190.13203736990435613No Hit
TTGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1190.13203736990435613No Hit
CTGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1180.13092781217406743No Hit
TACGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1170.1298182544437787No Hit
CCTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1170.1298182544437787No Hit
GGATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1170.1298182544437787No Hit
GCATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1170.1298182544437787No Hit
TACTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1160.12870869671349No Hit
TTAACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1160.12870869671349No Hit
GCTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1160.12870869671349No Hit
ATAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1150.1275991389832013No Hit
TCAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1150.1275991389832013No Hit
CTCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1150.1275991389832013No Hit
TGCCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1140.1264895812529126No Hit
ATGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1140.1264895812529126No Hit
GCCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1140.1264895812529126No Hit
TCCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1140.1264895812529126No Hit
GCCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1130.1253800235226239No Hit
GGCACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1130.1253800235226239No Hit
TCATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1110.12316090806204648No Hit
TGATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1110.12316090806204648No Hit
CATTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1100.12205135033175776No Hit
CGAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1100.12205135033175776No Hit
CGTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1100.12205135033175776No Hit
TCTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1070.11872267714089163No Hit
CCGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1070.11872267714089163No Hit
CTTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1070.11872267714089163No Hit
CTGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1060.11761311941060294No Hit
TTACCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1060.11761311941060294No Hit
GAGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1060.11761311941060294No Hit
ACTTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1050.11650356168031423No Hit
ATGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1050.11650356168031423No Hit
CGCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1050.11650356168031423No Hit
CAGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1040.11539400395002553No Hit
GACGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1030.11428444621973681No Hit
CTTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1030.11428444621973681No Hit
CGATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1030.11428444621973681No Hit
CTCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1020.1131748884894481No Hit
GCGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1020.1131748884894481No Hit
AGGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1010.1120653307591594No Hit
TATCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1010.1120653307591594No Hit
TCGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1010.1120653307591594No Hit
ATTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
GCTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
ATCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
GTCACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
TCCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
ATATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC1000.11095577302887069No Hit
ACGGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC990.10984621529858199No Hit
CGTACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC980.10873665756829327No Hit
TCGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC970.10762709983800457No Hit
ATCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC970.10762709983800457No Hit
GTCCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC970.10762709983800457No Hit
TAGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC960.10651754210771586No Hit
CCTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC960.10651754210771586No Hit
GGGACCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC960.10651754210771586No Hit
AGCTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC960.10651754210771586No Hit
AATGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC950.10540798437742717No Hit
GGACCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC950.10540798437742717No Hit
AGAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC940.10429842664713845No Hit
GTACCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC940.10429842664713845No Hit
AGTCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC940.10429842664713845No Hit
TAATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC940.10429842664713845No Hit
GTTTCCGTCAATTTCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGC930.10318886891684974No Hit
GAGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC930.10318886891684974No Hit
GGCCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC930.10318886891684974No Hit
CTAGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC930.10318886891684974No Hit
CGGCCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC920.10207931118656104No Hit
TGACCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC920.10207931118656104No Hit
GAATCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC920.10207931118656104No Hit
AATTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC920.10207931118656104No Hit
CCGTCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC910.10096975345627232No Hit
CCCGCCGTCAATTTCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGC910.10096975345627232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)